{
  "_id": "6a1e86801d7bb097a0a6771c",
  "Package": "MyoScore",
  "Title": "Transcriptomic Scoring for Human Skeletal Muscle Health",
  "Version": "1.0.1",
  "Authors@R": "person(\"Huahua\", \"Zhong\", email = \"huahuazhong@fudan.edu.cn\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7852-3982\"))",
  "Description": "Calculate MyoScore, a genetically informed muscle health\nscore, from bulk RNA sequencing (RNA-seq) raw count data.\nMyoScore integrates results from genome-wide association\nstudies (GWAS) and transcriptome-wide association studies\n(TWAS) across 28 muscle-related phenotypes to quantify muscle\nhealth along five dimensions (Strength, Mass, LeanMuscle,\nYouth, Resilience), each scored from 0 to 100. The package\nprovides preprocessing via counts per million (CPM)\nnormalization, dimension-level and composite scoring, and\nvisualization utilities including radar charts and grouped\nboxplots. For more information, see\n<https://github.com/Hirriririir/MyoScore>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/Hirriririir/MyoScore",
  "BugReports": "https://github.com/Hirriririir/MyoScore/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Repository": "https://hirriririir.r-universe.dev",
  "Date/Publication": "2026-04-03 04:39:58 UTC",
  "RemoteUrl": "https://github.com/hirriririir/myoscore",
  "RemoteRef": "HEAD",
  "RemoteSha": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 07:26:44 UTC",
    "User": "root"
  },
  "Author": "Huahua Zhong [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7852-3982>)",
  "Maintainer": "Huahua Zhong <huahuazhong@fudan.edu.cn>",
  "MD5sum": "eb1a35a37a15726b6845a393eddb4000",
  "_user": "hirriririir",
  "_type": "src",
  "_file": "MyoScore_1.0.1.tar.gz",
  "_fileid": "49d0ec08ebf1851d0db7957a2f088e129d5796b273f1b7da6874c56257a7b891",
  "_filesize": 144789,
  "_sha256": "49d0ec08ebf1851d0db7957a2f088e129d5796b273f1b7da6874c56257a7b891",
  "_created": "2026-06-02T07:26:44.000Z",
  "_published": "2026-06-02T07:30:08.379Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79020487617,
      "time": 120,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7351511019"
    },
    {
      "job": 79020487588,
      "time": 113,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351509116"
    },
    {
      "job": 79020487667,
      "time": 134,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7351508022"
    },
    {
      "job": 79020487602,
      "time": 172,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351515422"
    },
    {
      "job": 79020137258,
      "time": 140,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351472911"
    },
    {
      "job": 79020487608,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351504189"
    },
    {
      "job": 79020487723,
      "time": 69,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7351496002"
    },
    {
      "job": 79020487623,
      "time": 68,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7351494833"
    },
    {
      "job": 79020487626,
      "time": 72,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7351496548"
    }
  ],
  "_buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/hirriririir/myoscore",
  "_commit": {
    "id": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
    "author": "Hua <huatwofold@outlook.com>",
    "committer": "Hua <huatwofold@outlook.com>",
    "message": "fix\n",
    "time": 1775191198
  },
  "_maintainer": {
    "name": "Huahua Zhong",
    "email": "huahuazhong@fudan.edu.cn",
    "orcid": "0000-0002-7852-3982"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.4.0",
      "role": "Suggests"
    },
    {
      "package": "fmsb",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "hirriririir",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v1.0",
      "date": "2026-03-22"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "hirriririir",
      "count": 5,
      "uuid": 74590379
    }
  ],
  "_userbio": {
    "uuid": 74590379,
    "type": "user",
    "name": "Huahua Zhong",
    "description": "衷画画, MD, PhD, Resident & Clinical Postdoctoral Fellow, Huashan Rare Disease Center and Department of Neurology, Huashan Hospital, Fudan University."
  },
  "_downloads": {
    "count": 116,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MyoScore"
  },
  "_devurl": "https://github.com/hirriririir/myoscore",
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MyoScore.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/hirriririir/myoscore",
  "_realowner": "hirriririir",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2026-04-02"
    }
  ],
  "_exports": [
    "myoscore_colors",
    "myoscore_dimensions",
    "myoscore_plot_boxplot",
    "myoscore_plot_radar",
    "myoscore_preprocess",
    "myoscore_score",
    "myoscore_score_dimension",
    "myoscore_weights"
  ],
  "_datasets": [
    {
      "name": "myoscore_genes",
      "title": "MyoScore Gene Weights",
      "object": "myoscore_genes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "weight",
        "direction_v3",
        "dimension"
      ],
      "rows": 591,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "myoscore_colors",
      "title": "Get MyoScore color palette",
      "topics": [
        "myoscore_colors"
      ]
    },
    {
      "page": "myoscore_dimensions",
      "title": "Get MyoScore dimension names",
      "topics": [
        "myoscore_dimensions"
      ]
    },
    {
      "page": "myoscore_genes",
      "title": "MyoScore Gene Weights",
      "topics": [
        "myoscore_genes"
      ]
    },
    {
      "page": "myoscore_plot_boxplot",
      "title": "Boxplot of MyoScore by Groups",
      "topics": [
        "myoscore_plot_boxplot"
      ]
    },
    {
      "page": "myoscore_plot_radar",
      "title": "Radar Chart of MyoScore Dimensions",
      "topics": [
        "myoscore_plot_radar"
      ]
    },
    {
      "page": "myoscore_preprocess",
      "title": "Preprocess Raw Counts to log2(CPM+1)",
      "topics": [
        "myoscore_preprocess"
      ]
    },
    {
      "page": "myoscore_score",
      "title": "Calculate MyoScore from Raw Count Data",
      "topics": [
        "myoscore_score"
      ]
    },
    {
      "page": "myoscore_score_dimension",
      "title": "Calculate Score for a Single Dimension",
      "topics": [
        "myoscore_score_dimension"
      ]
    },
    {
      "page": "myoscore_weights",
      "title": "Get MyoScore dimension weights",
      "topics": [
        "myoscore_weights"
      ]
    },
    {
      "page": "myoscore-constants",
      "title": "MyoScore Dimension Weights and Constants",
      "topics": [
        "myoscore-constants"
      ]
    }
  ],
  "_pkglogo": "https://github.com/hirriririir/myoscore/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/hirriririir/myoscore/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "quick_start.Rmd",
      "filename": "quick_start.html",
      "title": "Quick Start: MyoScore",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Installation",
        "Basic Usage",
        "Calculate MyoScore from a count matrix",
        "Explore the gene weights",
        "Preprocessing only",
        "Single dimension",
        "Visualization",
        "Radar chart",
        "Grouped boxplot",
        "Input Requirements",
        "Color Palette",
        "Citation"
      ],
      "created": "2026-03-22 09:42:43",
      "modified": "2026-03-22 09:42:43",
      "commits": 1
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "myoscore",
  "_universes": [
    "hirriririir"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-06-02T07:28:45.000Z",
      "distro": "noble",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "5e80ba04c56567656de2a33a9c4b3aee926d0bcb8f346a389cf1b761edc22962",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-06-02T07:28:40.000Z",
      "distro": "noble",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "f372fec6d476581b8855d3e66128cf72ce1af600a402abc18c89b8ec1c7af5be",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-06-02T07:28:40.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "b1755828f62b1726772d9ee431006ccae0c534df9dfb3574b1f5d9e8a8e9d288",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-06-02T07:28:57.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "fe162ce4ad87067b67879bdec6dc621aa0f5d67b57e5c70b2ee84483964c84f1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-06-02T07:28:36.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "689aaa7e7ba76a2b680ad4f90de41bd98c1c4dbe16eb03eacce61010c6bf78ac",
      "status": "success",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-02T07:27:53.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "246309c8f0168e66253bec1d65dc620d4e18076308d205b962f605adf7133dda",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-02T07:27:49.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "7fc7fc287ab64aadb7aed2c0e3fe5aff5c985fa7881c03e379a83727df45d34b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-02T07:27:58.000Z",
      "commit": "3731031ce9bf03ae2ea267b06d3c74644bfe5809",
      "fileid": "19ac0737a0e4ec4c38ed00e92a220c70623d24bad2f1d52636c378c2ca40c6c2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hirriririir/actions/runs/26804958165"
    }
  ]
}