Overview | Installation | Basic Usage | Calculate MyoScore from a count matrix | Explore the gene weights | Preprocessing only | Single dimension | Visualization | Radar chart | Grouped boxplot | Input Requirements | Color Palette | Citation
Package: MyoScore 1.0.1
Huahua Zhong
MyoScore: Transcriptomic Scoring for Human Skeletal Muscle Health
Calculate MyoScore, a genetically informed muscle health score, from bulk RNA sequencing (RNA-seq) raw count data. MyoScore integrates results from genome-wide association studies (GWAS) and transcriptome-wide association studies (TWAS) across 28 muscle-related phenotypes to quantify muscle health along five dimensions (Strength, Mass, LeanMuscle, Youth, Resilience), each scored from 0 to 100. The package provides preprocessing via counts per million (CPM) normalization, dimension-level and composite scoring, and visualization utilities including radar charts and grouped boxplots. For more information, see <https://github.com/Hirriririir/MyoScore>.
Authors:
MyoScore_1.0.1.tar.gz
MyoScore_1.0.1.zip(r-4.7)MyoScore_1.0.1.zip(r-4.6)MyoScore_1.0.1.zip(r-4.5)
MyoScore_1.0.1.tgz(r-4.6-any)MyoScore_1.0.1.tgz(r-4.5-any)
MyoScore_1.0.1.tar.gz(r-4.7-any)MyoScore_1.0.1.tar.gz(r-4.6-any)
MyoScore_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MyoScore/json (API)
| # Install 'MyoScore' in R: |
| install.packages('MyoScore', repos = c('https://hirriririir.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hirriririir/myoscore/issues
Datasets:
- myoscore_genes - MyoScore Gene Weights
Last updated from:3731031ce9. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 120 | ||
| source / vignettes | OK | 162 | ||
| linux-release-x86_64 | OK | 121 | ||
| macos-release-arm64 | OK | 157 | ||
| macos-oldrel-arm64 | OK | 131 | ||
| windows-devel | OK | 84 | ||
| windows-release | OK | 102 | ||
| windows-oldrel | OK | 72 | ||
| wasm-release | OK | 96 |
Exports:myoscore_colorsmyoscore_dimensionsmyoscore_plot_boxplotmyoscore_plot_radarmyoscore_preprocessmyoscore_scoremyoscore_score_dimensionmyoscore_weights
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get MyoScore color palette | myoscore_colors |
| Get MyoScore dimension names | myoscore_dimensions |
| MyoScore Gene Weights | myoscore_genes |
| Boxplot of MyoScore by Groups | myoscore_plot_boxplot |
| Radar Chart of MyoScore Dimensions | myoscore_plot_radar |
| Preprocess Raw Counts to log2(CPM+1) | myoscore_preprocess |
| Calculate MyoScore from Raw Count Data | myoscore_score |
| Calculate Score for a Single Dimension | myoscore_score_dimension |
| Get MyoScore dimension weights | myoscore_weights |
| MyoScore Dimension Weights and Constants | myoscore-constants |